Package: EvoPhylo
Version: 0.3.5
Title: Pre- And Postprocessing of Morphological Data from Relaxed Clock
        Bayesian Phylogenetics
Description: Performs automated morphological character partitioning
        for phylogenetic analyses and analyze macroevolutionary
        parameter outputs from clock (time-calibrated) Bayesian
        inference analyses, following concepts introduced by Simões and
        Pierce (2021) <doi:10.1038/s41559-021-01532-x>.
Authors@R: c(
  person("Tiago", "Simoes", role = c("cre", "aut"),
         email = "trsimoes87@gmail.com", 
         comment = c(ORCID = "0000-0003-4716-649X")),
  person("Noah", "Greifer", role = c("aut"), 
         email = "ngreifer@iq.harvard.edu",
	       comment = c(ORCID="0000-0003-3067-7154")),
  person("Joelle", "Barido-Sottani", role = c("aut"), 
         email = "joelle.barido-sottani@m4x.org",
	       comment = c(ORCID="0000-0002-5220-5468")),
  person("Stephanie", "Pierce", role = c("aut"),
         email = "spierce@oeb.harvard.edu", 
         comment = c(ORCID = "0000-0003-0717-1841"))
  )
Depends: R (>= 4.0.0)
Imports: ape (>= 1.16.2), dplyr (>= 1.0.8), cluster (>= 2.1.2),
        deeptime (>= 0.2.0), ggplot2 (>= 3.3.5), ggrepel (>= 0.9.1),
        ggtree (>= 3.1.5.902), patchwork, treeio (>= 1.16.2), Rtsne (>=
        0.15), unglue (>= 0.1.0), tidyr, tibble, tools, phangorn,
        magrittr
Suggests: devtools, kableExtra, knitr, rmarkdown
Encoding: UTF-8
LazyData: false
License: GPL (>=2)
URL: https://github.com/tiago-simoes/EvoPhylo,
        https://tiago-simoes.github.io/EvoPhylo/
BugReports: https://github.com/tiago-simoes/EvoPhylo/issues
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libicu-dev libjpeg-dev
        libpng-dev libuv1-dev libxml2-dev libssl-dev
Repository: https://tiago-simoes.r-universe.dev
Date/Publication: 2025-08-27 14:14:33 UTC
RemoteUrl: https://github.com/tiago-simoes/evophylo
RemoteRef: HEAD
RemoteSha: 17d07eb2d408397d4a4363e7dbb4953d20af5c69
NeedsCompilation: no
Packaged: 2026-06-23 09:07:05 UTC; root
Author: Tiago Simoes [cre, aut] (ORCID:
    <https://orcid.org/0000-0003-4716-649X>),
  Noah Greifer [aut] (ORCID: <https://orcid.org/0000-0003-3067-7154>),
  Joelle Barido-Sottani [aut] (ORCID:
    <https://orcid.org/0000-0002-5220-5468>),
  Stephanie Pierce [aut] (ORCID: <https://orcid.org/0000-0003-0717-1841>)
Maintainer: Tiago Simoes <trsimoes87@gmail.com>